Detailed information of SNP:
|
SNP ID:
sf1121606420(Gbrowse)
Chromosome: chr11 Position: 21606420 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.89% | 42.11% |
| All Indica | 795 | 77.48% | 22.52% |
| All Japonica | 497 | 23.54% | 76.46% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 211 | 73.46% | 26.54% |
| Indica Intermediate | 209 | 70.81% | 29.19% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121606420 | C->T | INTERGENIC | None |