Detailed information of SNP:
|
SNP ID:
sf1121615738(Gbrowse)
Chromosome: chr11 Position: 21615738 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 52.45% | 47.55% |
| All Indica | 779 | 30.81% | 69.19% |
| All Japonica | 490 | 89.80% | 10.20% |
| Aus | 65 | 15.38% | 84.62% |
| Indica I | 366 | 33.33% | 66.67% |
| Indica II | 206 | 22.33% | 77.67% |
| Indica Intermediate | 207 | 34.78% | 65.22% |
| Temperate Japonica | 333 | 92.79% | 7.21% |
| Tropical Japonica | 89 | 84.27% | 15.73% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121615738 | C->T | INTERGENIC | None |