Detailed information of SNP:
|
SNP ID:
sf1121619684(Gbrowse)
Chromosome: chr11 Position: 21619684 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 50.14% | 49.86% |
| All Indica | 777 | 27.93% | 72.07% |
| All Japonica | 492 | 87.20% | 12.80% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 362 | 29.56% | 70.44% |
| Indica II | 210 | 21.43% | 78.57% |
| Indica Intermediate | 205 | 31.71% | 68.29% |
| Temperate Japonica | 333 | 89.79% | 10.21% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121619684 | A->G | LOC_Os11g37400(LOC_Os11g37400.1) | INTRON |