Detailed information of SNP:
|
SNP ID:
sf1121672065(Gbrowse)
Chromosome: chr11 Position: 21672065 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.23% | 48.77% |
| All Indica | 798 | 76.57% | 23.43% |
| All Japonica | 496 | 7.46% | 92.54% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121672065 | A->G | INTERGENIC | None |