Detailed information of SNP:
|
SNP ID:
sf1121672188(Gbrowse)
Chromosome: chr11 Position: 21672188 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 58.31% | 41.69% |
| All Indica | 799 | 29.79% | 70.21% |
| All Japonica | 486 | 97.12% | 2.88% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 43.73% | 56.27% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 324 | 97.22% | 2.78% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121672188 | C->T | INTERGENIC | None |