Detailed information of SNP:
|
SNP ID:
sf1121673251(Gbrowse)
Chromosome: chr11 Position: 21673251 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.78% | 49.22% |
| All Indica | 799 | 74.84% | 25.16% |
| All Japonica | 496 | 7.86% | 92.14% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 62.13% | 37.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121673251 | G->A | INTERGENIC | None |