Detailed information of SNP:
|
SNP ID:
sf1121673498(Gbrowse)
Chromosome: chr11 Position: 21673498 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.30% | 47.70% |
| All Indica | 795 | 26.54% | 73.46% |
| All Japonica | 495 | 93.94% | 6.06% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 38.24% | 61.76% |
| Indica II | 211 | 7.58% | 92.42% |
| Indica Intermediate | 210 | 24.76% | 75.24% |
| Temperate Japonica | 333 | 92.19% | 7.81% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121673498 | G->A | INTERGENIC | None |