Detailed information of SNP:
|
SNP ID:
sf1121683716(Gbrowse)
Chromosome: chr11 Position: 21683716 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 51.13% | 48.87% |
| All Indica | 796 | 24.50% | 75.50% |
| All Japonica | 494 | 86.23% | 13.77% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 374 | 18.45% | 81.55% |
| Indica II | 211 | 30.33% | 69.67% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 332 | 92.47% | 7.53% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121683716 | G->A | INTERGENIC | None |