Detailed information of SNP:
|
SNP ID:
sf1121717591(Gbrowse)
Chromosome: chr11 Position: 21717591 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 83.51% | 16.49% |
| All Indica | 763 | 71.69% | 28.31% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 358 | 62.29% | 37.71% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 199 | 77.39% | 22.61% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121717591 | C->T | INTERGENIC | None |