Detailed information of SNP:
|
SNP ID:
sf1121717650(Gbrowse)
Chromosome: chr11 Position: 21717650 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 81.20% | 18.80% |
| All Indica | 766 | 68.80% | 31.20% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 362 | 61.60% | 38.40% |
| Indica II | 204 | 75.98% | 24.02% |
| Indica Intermediate | 200 | 74.50% | 25.50% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121717650 | T->C | INTERGENIC | None |