Detailed information of SNP:
|
SNP ID:
sf1121717798(Gbrowse)
Chromosome: chr11 Position: 21717798 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 82.27% | 17.73% |
| All Indica | 748 | 70.05% | 29.95% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 348 | 58.62% | 41.38% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 194 | 77.32% | 22.68% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121717798 | C->T | INTERGENIC | None |