Detailed information of SNP:
|
SNP ID:
sf1121718242(Gbrowse)
Chromosome: chr11 Position: 21718242 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 80.45% | 19.55% |
| All Indica | 772 | 68.13% | 31.87% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 360 | 59.72% | 40.28% |
| Indica II | 206 | 80.10% | 19.90% |
| Indica Intermediate | 206 | 70.87% | 29.13% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121718242 | A->T | INTERGENIC | None |