Detailed information of SNP:
|
SNP ID:
sf1121729348(Gbrowse)
Chromosome: chr11 Position: 21729348 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 84.57% | 15.43% |
| All Indica | 754 | 87.00% | 13.00% |
| All Japonica | 455 | 78.02% | 21.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 348 | 83.05% | 16.95% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 194 | 83.51% | 16.49% |
| Temperate Japonica | 309 | 90.61% | 9.39% |
| Tropical Japonica | 82 | 37.80% | 62.20% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121729348 | C->T | LOC_Os11g37600(LOC_Os11g37600.1) | SNPs that introduce stop codons |