Detailed information of SNP:
|
SNP ID:
sf1121729679(Gbrowse)
Chromosome: chr11 Position: 21729679 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1311 | 81.54% | 18.46% |
| All Indica | 712 | 77.67% | 22.33% |
| All Japonica | 484 | 85.74% | 14.26% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 325 | 71.69% | 28.31% |
| Indica II | 198 | 90.91% | 9.09% |
| Indica Intermediate | 189 | 74.07% | 25.93% |
| Temperate Japonica | 330 | 93.03% | 6.97% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 62 | 67.74% | 32.26% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121729679 | T->C | LOC_Os11g37600(LOC_Os11g37600.1) | Non-Synonymous SNP |