Detailed information of SNP:
|
SNP ID:
sf1121731648(Gbrowse)
Chromosome: chr11 Position: 21731648 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 67.84% | 32.16% |
| All Indica | 774 | 75.32% | 24.68% |
| All Japonica | 490 | 51.84% | 48.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 69.29% | 30.71% |
| Indica II | 207 | 90.82% | 9.18% |
| Indica Intermediate | 199 | 70.35% | 29.65% |
| Temperate Japonica | 332 | 68.37% | 31.63% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 66 | 25.76% | 74.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121731648 | T->C | LOC_Os11g37600(LOC_Os11g37600.1) | Synonymous |