Detailed information of SNP:
|
SNP ID:
sf1121741102(Gbrowse)
Chromosome: chr11 Position: 21741102 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.63% | 46.37% |
| All Indica | 798 | 61.53% | 38.47% |
| All Japonica | 497 | 37.42% | 62.58% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 52.14% | 47.86% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121741102 | G->A | INTERGENIC | None |