Detailed information of SNP:
|
SNP ID:
sf1121751699(Gbrowse)
Chromosome: chr11 Position: 21751699 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 65.47% | 34.53% |
| All Indica | 799 | 76.47% | 23.53% |
| All Japonica | 497 | 42.25% | 57.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 64.53% | 35.47% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 34.63% | 65.37% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121751699 | G->A | LOC_Os11g37640(LOC_Os11g37640.1) | INTRON |