Detailed information of SNP:
|
SNP ID:
sf1121752928(Gbrowse)
Chromosome: chr11 Position: 21752928 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 65.61% | 34.39% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 497 | 42.05% | 57.95% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 64.53% | 35.47% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121752928 | A->G | LOC_Os11g37640(LOC_Os11g37640.1) | UTR_3_PRIME |