Detailed information of SNP:
|
SNP ID:
sf1121774213(Gbrowse)
Chromosome: chr11 Position: 21774213 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 88.56% | 11.44% |
| All Indica | 797 | 89.21% | 10.79% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121774213 | C->T | INTERGENIC | None |