Detailed information of SNP:
|
SNP ID:
sf1121780286(Gbrowse)
Chromosome: chr11 Position: 21780286 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 82.57% | 17.43% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 57.55% | 42.45% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 39.10% | 60.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121780286 | T->C | INTERGENIC | None |