Detailed information of SNP:
|
SNP ID:
sf1121781122(Gbrowse)
Chromosome: chr11 Position: 21781122 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 94.35% | 5.65% |
| All Indica | 797 | 92.10% | 7.90% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121781122 | G->A | INTERGENIC | None |