Detailed information of SNP:
|
SNP ID:
sf1121807883(Gbrowse)
Chromosome: chr11 Position: 21807883 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 70.09% | 29.91% |
| All Indica | 793 | 96.09% | 3.91% |
| All Japonica | 496 | 26.21% | 73.79% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 24.25% | 75.75% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121807883 | T->C | LOC_Os11g37700(LOC_Os11g37700.1) | INTRON |