Detailed information of SNP:
|
SNP ID:
sf1121832470(Gbrowse)
Chromosome: chr11 Position: 21832470 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 94.73% | 5.27% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 482 | 86.93% | 13.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 95.48% | 4.52% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 58 | 58.62% | 41.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121832470 | C->G | INTERGENIC | None |