Detailed information of SNP:
|
SNP ID:
sf1121845728(Gbrowse)
Chromosome: chr11 Position: 21845728 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 92.81% | 7.19% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121845728 | T->G | LOC_Os11g37740(LOC_Os11g37740.1) | INTRON |