Detailed information of SNP:
|
SNP ID:
sf1121861439(Gbrowse)
Chromosome: chr11 Position: 21861439 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 85.46% | 14.54% |
| All Indica | 777 | 75.03% | 24.97% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 86.34% | 13.66% |
| Indica II | 206 | 55.34% | 44.66% |
| Indica Intermediate | 205 | 74.63% | 25.37% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121861439 | A->G | INTERGENIC | None |