Detailed information of SNP:
|
SNP ID:
sf1121870641(Gbrowse)
Chromosome: chr11 Position: 21870641 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 84.82% | 15.18% |
| All Indica | 791 | 86.47% | 13.53% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 368 | 84.24% | 15.76% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121870641 | A->C | INTERGENIC | None |