Detailed information of SNP:
|
SNP ID:
sf1121870767(Gbrowse)
Chromosome: chr11 Position: 21870767 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 78.70% | 21.30% |
| All Indica | 768 | 94.14% | 5.86% |
| All Japonica | 497 | 52.31% | 47.69% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 366 | 94.81% | 5.19% |
| Indica II | 199 | 90.95% | 9.05% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 335 | 33.43% | 66.57% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121870767 | T->C | INTERGENIC | None |