Detailed information of SNP:
|
SNP ID:
sf1121875254(Gbrowse)
Chromosome: chr11 Position: 21875254 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 62.88% | 37.12% |
| All Indica | 782 | 68.93% | 31.07% |
| All Japonica | 497 | 50.30% | 49.70% |
| Aus | 63 | 73.02% | 26.98% |
| Indica I | 369 | 69.92% | 30.08% |
| Indica II | 211 | 72.99% | 27.01% |
| Indica Intermediate | 202 | 62.87% | 37.13% |
| Temperate Japonica | 335 | 32.54% | 67.46% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121875254 | G->A | INTERGENIC | None |