Detailed information of SNP:
|
SNP ID:
sf1121879093(Gbrowse)
Chromosome: chr11 Position: 21879093 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 86.33% | 13.67% |
| All Indica | 773 | 87.32% | 12.68% |
| All Japonica | 471 | 85.35% | 14.65% |
| Aus | 62 | 74.19% | 25.81% |
| Indica I | 363 | 88.43% | 11.57% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 200 | 85.50% | 14.50% |
| Temperate Japonica | 310 | 79.35% | 20.65% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121879093 | T->C | INTERGENIC | None |