Detailed information of SNP:
|
SNP ID:
sf1121890693(Gbrowse)
Chromosome: chr11 Position: 21890693 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 82.08% | 17.92% |
| All Indica | 789 | 92.27% | 7.73% |
| All Japonica | 494 | 67.21% | 32.79% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 370 | 92.16% | 7.84% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 75.82% | 24.18% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121890693 | G->A | INTERGENIC | None |