Detailed information of SNP:
|
SNP ID:
sf1121898379(Gbrowse)
Chromosome: chr11 Position: 21898379 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 90.47% | 9.53% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 495 | 75.76% | 24.24% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 92 | 51.09% | 48.91% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121898379 | T->G | INTERGENIC | None |