Detailed information of SNP:
|
SNP ID:
sf1121898938(Gbrowse)
Chromosome: chr11 Position: 21898938 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 58.66% | 41.34% |
| All Indica | 742 | 63.21% | 36.79% |
| All Japonica | 497 | 49.50% | 50.50% |
| Aus | 64 | 54.69% | 45.31% |
| Indica I | 343 | 59.77% | 40.23% |
| Indica II | 197 | 68.53% | 31.47% |
| Indica Intermediate | 202 | 63.86% | 36.14% |
| Temperate Japonica | 335 | 32.24% | 67.76% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121898938 | A->T | INTERGENIC | None |