Detailed information of SNP:
|
SNP ID:
sf1121904961(Gbrowse)
Chromosome: chr11 Position: 21904961 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 92.67% | 7.33% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121904961 | A->G | INTERGENIC | None |