Detailed information of SNP:
|
SNP ID:
sf1121907267(Gbrowse)
Chromosome: chr11 Position: 21907267 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1238 | 60.10% | 39.90% |
| All Indica | 662 | 59.06% | 40.94% |
| All Japonica | 466 | 64.38% | 35.62% |
| Aus | 58 | 56.90% | 43.10% |
| Indica I | 317 | 65.93% | 34.07% |
| Indica II | 171 | 47.95% | 52.05% |
| Indica Intermediate | 174 | 57.47% | 42.53% |
| Temperate Japonica | 320 | 75.31% | 24.69% |
| Tropical Japonica | 84 | 29.76% | 70.24% |
| Japonica Intermediate | 62 | 54.84% | 45.16% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121907267 | A->G | INTERGENIC | None |