Detailed information of SNP:
|
SNP ID:
sf1121907431(Gbrowse)
Chromosome: chr11 Position: 21907431 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 85.07% | 14.93% |
| All Indica | 792 | 79.55% | 20.45% |
| All Japonica | 496 | 93.95% | 6.05% |
| Aus | 59 | 83.05% | 16.95% |
| Indica I | 372 | 78.23% | 21.77% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 208 | 77.40% | 22.60% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121907431 | G->A | INTERGENIC | None |