Detailed information of SNP:
|
SNP ID:
sf1121908993(Gbrowse)
Chromosome: chr11 Position: 21908993 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 84.86% | 15.14% |
| All Indica | 792 | 80.18% | 19.82% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 62 | 79.03% | 20.97% |
| Indica I | 370 | 77.84% | 22.16% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121908993 | G->A | INTERGENIC | None |