Detailed information of SNP:



SNP ID: sf1121909831(Gbrowse)

Chromosome: chr11

Position: 21909831
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1306 52.45% 47.55%
All Indica699 50.21% 49.79%
All Japonica491 57.64% 42.36%
Aus62 61.29% 38.71%
Indica I332 50.30% 49.70%
Indica II190 50.53% 49.47%
Indica Intermediate177 49.72% 50.28%
Temperate Japonica334 70.06% 29.94%
Tropical Japonica91 23.08% 76.92%
Japonica Intermediate66 42.42% 57.58%
Group VI/Aromatic14 7.14% 92.86%
Intermediate40 30.00% 70.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1121909831 T->C INTERGENIC None