Detailed information of SNP:
|
SNP ID:
sf1121909831(Gbrowse)
Chromosome: chr11 Position: 21909831 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1306 | 52.45% | 47.55% |
| All Indica | 699 | 50.21% | 49.79% |
| All Japonica | 491 | 57.64% | 42.36% |
| Aus | 62 | 61.29% | 38.71% |
| Indica I | 332 | 50.30% | 49.70% |
| Indica II | 190 | 50.53% | 49.47% |
| Indica Intermediate | 177 | 49.72% | 50.28% |
| Temperate Japonica | 334 | 70.06% | 29.94% |
| Tropical Japonica | 91 | 23.08% | 76.92% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 30.00% | 70.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121909831 | T->C | INTERGENIC | None |