Detailed information of SNP:
|
SNP ID:
sf1121911155(Gbrowse)
Chromosome: chr11 Position: 21911155 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 94.69% | 5.31% |
| All Indica | 745 | 94.36% | 5.64% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 345 | 97.39% | 2.61% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 191 | 92.67% | 7.33% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121911155 | C->A | INTERGENIC | None |