Detailed information of SNP:
|
SNP ID:
sf1121921668(Gbrowse)
Chromosome: chr11 Position: 21921668 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.11% | 7.89% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121921668 | C->A | LOC_Os11g37800(LOC_Os11g37800.1) | INTRON |