Detailed information of SNP:
|
SNP ID:
sf1121943504(Gbrowse)
Chromosome: chr11 Position: 21943504 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 84.22% | 15.78% |
| All Indica | 797 | 86.83% | 13.17% |
| All Japonica | 494 | 81.78% | 18.22% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 373 | 84.18% | 15.82% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 334 | 82.04% | 17.96% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121943504 | T->G | INTERGENIC | None |