Detailed information of SNP:
|
SNP ID:
sf1121944770(Gbrowse)
Chromosome: chr11 Position: 21944770 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 65.09% | 34.91% |
| All Indica | 728 | 66.07% | 33.93% |
| All Japonica | 491 | 65.78% | 34.22% |
| Aus | 63 | 68.25% | 31.75% |
| Indica I | 337 | 65.88% | 34.12% |
| Indica II | 200 | 65.50% | 34.50% |
| Indica Intermediate | 191 | 67.02% | 32.98% |
| Temperate Japonica | 334 | 71.56% | 28.44% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 66 | 30.30% | 69.70% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121944770 | C->T | INTERGENIC | None |