Detailed information of SNP:
|
SNP ID:
sf1121944811(Gbrowse)
Chromosome: chr11 Position: 21944811 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 83.21% | 16.79% |
| All Indica | 793 | 86.25% | 13.75% |
| All Japonica | 492 | 80.89% | 19.11% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 207 | 83.09% | 16.91% |
| Temperate Japonica | 333 | 81.38% | 18.62% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121944811 | C->G | INTERGENIC | None |