Detailed information of SNP:
|
SNP ID:
sf1121948358(Gbrowse)
Chromosome: chr11 Position: 21948358 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 88.27% | 11.73% |
| All Indica | 791 | 86.98% | 13.02% |
| All Japonica | 494 | 93.52% | 6.48% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 208 | 76.44% | 23.56% |
| Temperate Japonica | 334 | 94.91% | 5.09% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121948358 | C->T | INTERGENIC | None |