Detailed information of SNP:
SNP ID:
sf1121950840(Gbrowse)
Chromosome: chr11 Position: 21950840 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 96.61% | 3.39% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 496 | 91.53% | 8.47% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 96.72% | 3.28% |
Tropical Japonica | 94 | 82.98% | 17.02% |
Japonica Intermediate | 67 | 77.61% | 22.39% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1121950840 | C->A | INTERGENIC | None |