Detailed information of SNP:



SNP ID: sf1121951890(Gbrowse)

Chromosome: chr11

Position: 21951890
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 96.97% 3.03%
All Indica799 99.87% 0.13%
All Japonica497 91.95% 8.05%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 88.06% 11.94%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1121951890 C->T INTERGENIC None