Detailed information of SNP:
|
SNP ID:
sf1121960946(Gbrowse)
Chromosome: chr11 Position: 21960946 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 54.42% | 45.58% |
| All Indica | 797 | 31.99% | 68.01% |
| All Japonica | 494 | 93.12% | 6.88% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 19.79% | 80.21% |
| Indica II | 212 | 46.70% | 53.30% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121960946 | C->T | INTERGENIC | None |