Detailed information of SNP:
|
SNP ID:
sf1121961714(Gbrowse)
Chromosome: chr11 Position: 21961714 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 77.91% | 22.09% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 471 | 39.28% | 60.72% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 31.12% | 68.88% |
| Tropical Japonica | 81 | 39.51% | 60.49% |
| Japonica Intermediate | 59 | 84.75% | 15.25% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121961714 | C->A | LOC_Os11g37860(LOC_Os11g37860.1) | UTR_5_PRIME |