Detailed information of SNP:
|
SNP ID:
sf1121970029(Gbrowse)
Chromosome: chr11 Position: 21970029 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 94.01% | 5.99% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 485 | 84.54% | 15.46% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 326 | 92.94% | 7.06% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121970029 | G->A | INTERGENIC | None |