Detailed information of SNP:
|
SNP ID:
sf1121979670(Gbrowse)
Chromosome: chr11 Position: 21979670 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 90.57% | 9.43% |
| All Indica | 775 | 96.39% | 3.61% |
| All Japonica | 484 | 83.26% | 16.74% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 193 | 91.71% | 8.29% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 333 | 90.69% | 9.31% |
| Tropical Japonica | 89 | 70.79% | 29.21% |
| Japonica Intermediate | 62 | 61.29% | 38.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121979670 | T->C | INTERGENIC | None |