Detailed information of SNP:
|
SNP ID:
sf1121980151(Gbrowse)
Chromosome: chr11 Position: 21980151 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 75.92% | 24.08% |
| All Indica | 777 | 96.40% | 3.60% |
| All Japonica | 495 | 42.22% | 57.78% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 365 | 97.26% | 2.74% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 203 | 94.09% | 5.91% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121980151 | T->C | INTERGENIC | None |